The scientific research competitiveness refers to the ability to obtain resources in competition,which affects the overall level of universities. The evaluation of it can help to understand the scientific research level of the pharmaceutical sciences in our coun- try and to diagnose the problems existing in the scientific research,so as to improve the overall scientific research ability of the pharma- cy. In this paper,based on the research data of 159 universities in China,the evaluation model in colleges and universities is estab- lished by carrying out systematic clustering and principal component analysis on the first set of indicators. And then using the model to evaluate and rank the university with the master undefines degree of pharmacy. It is found that the Peking Union Medical College,the Chinese Academy of Sciences,the University of Chinese Academy of Sciences,the University of Chinese Medicine,and the Shenyang Pharmaceutical University have a strong scientific research and competitive ability in the field of pharmacy.